N Gehlenborg, SI O’Donoghue, NS Baliga, A Goesmann, MA Hibbs, H Kitano, O Kohlbacher, H Neuweger, R Schneider, D Tenenbaum and AC Gavin, “Visualization of Omics Data for Systems Biology“, Nature Methods7(3):S56-S68 (2010).
D Hwang*, IY Lee*, H Yoo*, N Gehlenborg, J Cho, B Petritis, D Baxter, R Pitstick, R Young, D Spicer, N Price, JG Hohmann, SJ DeArmond, GA Carlson and LE Hood, “A Systems Approach to Prion Disease“, Molecular Systems Biology 5:252 (2009).
SI O’Donoghue, AC Gavin, N Gehlenborg, DS Goodsell, JK Heriche, CB Nielsen, C North, AJ Olson, JB Procter, DW Shattuck, T Walter and B Wong, “Visualizing biological data – now and in the future“. Nature Methods7(3):S2-S4 (2010).
N Gehlenborg, “Visualisierung für DNA-Chip-Analysen“, in D. Spath, K. Haasis and D. Klumpp (Eds.), Aktuelle Trends in der Softwareforschung (Vol. 3), 259-270, IRB Fraunhofer Verlag, Stuttgart, Germany (2005). In German.
Publications
Peer-Reviewed Journal & Conference Papers
J Caldas*, N Gehlenborg*, E Kettunen, A Faisal, M Rönty, AG Nicholson, S Knuutila, A Brazma and S Kaski, “ Data-Driven Information Retrieval in Heterogeneous Collections of Transcriptomics Data Links SIM2s to Malignant Pleural Mesothelioma“, Bioinformatics 28(2):246-253 (2012).
N Gehlenborg, SI O’Donoghue, NS Baliga, A Goesmann, MA Hibbs, H Kitano, O Kohlbacher, H Neuweger, R Schneider, D Tenenbaum and AC Gavin, “Visualization of Omics Data for Systems Biology“, Nature Methods 7(3):S56-S68 (2010).
J Peltonen, H Aidos, N Gehlenborg, A Brazma and S Kaski, “An Information Retrieval Perspective on Visualization of Gene Expression Data with Ontological Annotation“. In Proceedings of the IEEE 2010 International Conference on Acoustics, Speech, and Signal Processing (ICASSP 2010), 2178-2181 (2010).
N Gehlenborg*, D Hwang*, IY Lee*, H Yoo, B Petritis, D Baxter, R Pitstick, B Marzolf, SJ DeArmond, GA Carlson and LE Hood, “The Prion Disease Database: A Comprehensive Transcriptome Resource for Systems Biology Research in Prion Diseases“, Database 2009:bap011 (2009).
J Caldas, N Gehlenborg, A Faisal, A Brazma and S Kaski, “Probabilistic retrieval and visualization of biologically relevant microarray experiments“, Bioinformatics 25(12):i145-i153 (2009).
D Hwang*, IY Lee*, H Yoo*, N Gehlenborg, J Cho, B Petritis, D Baxter, R Pitstick, R Young, D Spicer, N Price, JG Hohmann, SJ DeArmond, GA Carlson and LE Hood, “A Systems Approach to Prion Disease“, Molecular Systems Biology 5:252 (2009).
N Gehlenborg, W Yan, I Lee, H Yoo, K Nieselt, D Hwang, R Aebersold, L Hood, “Prequips – An Extensible Software Platform for Integration, Visualization and Analysis of LC-MS/MS Proteomics Data“, Bioinformatics 25(5):682-683 (2009).
A Schmidt, N Gehlenborg, B Bodenmiller, LN Mueller, D Campbell, M Mueller, R Aebersold and B Domon, “An integrated, directed mass spectrometric approach for in-depth characterization of complex peptide mixtures“, Molecular & Cellular Proteomics 7:2138-2150 (2008).
J Dietzsch*, N Gehlenborg* and K Nieselt, “Mayday – A Microarray Data Analysis Workbench“, Bioinformatics 22(8):1010-1012 (2006).
N Gehlenborg, J Dietzsch and K Nieselt, “A Framework for Visualization of Microarray Data and Integrated Meta Information“, Information Visualization 4(3):164-175 (2005).
Commentaries, Editorials, Book Chapters & Published Abstracts
N Gehlenborg and B Wong, “Points of View: Networks“. Nature Methods 9(2):115 (2012).
SI O’Donoghue, AC Gavin, N Gehlenborg, DS Goodsell, JK Heriche, CB Nielsen, C North, AJ Olson, JB Procter, DW Shattuck, T Walter and B Wong, “Visualizing biological data – now and in the future“. Nature Methods 7(3):S2-S4 (2010).
N Gehlenborg and A Brazma, “Visualization of Large Microarray Experiments with Space Maps” (Abstract), BMC Bioinformatics 10(Suppl 13):O7 (2009).
J Caldas, N Gehlenborg, A Faisal, A Brazma and S Kaski, “Probabilistic Retrieval and Visualization of Biologically Relevant Microarray Experiments” (Abstract), BMC Bioinformatics 10(Suppl 13):P1 (2009).
L Peixoto, N Gehlenborg and S Chandra Janga (Eds.), “Highlights from the Fourth International Society for Computational Biology (ISCB) Student Council Symposium at the Sixteenth Annual International Conference on Intelligent Systems for Molecular Biology (ISMB)“, BMC Bioinformatics 9(Suppl 10):I1 (2008).
M Corpas, N Gehlenborg, S Chandra Janga and PE Bourne, “Ten Simple Rules for Organizing a Scientific Meeting“, PLoS Computational Biology 4, e1000080 (2008).
N Gehlenborg, M Corpas and S Chandra Janga (Eds.), “Highlights from the Third International Society for Computational Biology (ISCB) Student Council Symposium at the Fifteenth Annual International Conference on Intelligent Systems for Molecular Biology (ISMB)“, BMC Bioinformatics 8(Suppl 8):I1 (2007).
N Gehlenborg, “Visualisierung für DNA-Chip-Analysen“, in D. Spath, K. Haasis and D. Klumpp (Eds.), Aktuelle Trends in der Softwareforschung (Vol. 3), 259-270, IRB Fraunhofer Verlag, Stuttgart, Germany (2005). In German.
* equally contributing authors
Theses
N Gehlenborg, “Visualization and Exploration of Transcriptomics Data“, PhD Thesis, University of Cambridge, United Kingdom (2010).
N Gehlenborg, “Visualization and Integration of Liquid Chromatography/Mass Spectrometry Proteomics Data“, Diplomarbeit (eq. Masters Thesis), University of Tübingen, Germany (2006).
N Gehlenborg, “Mayday – Microarray Data Analysis“, Studienarbeit (eq. Bachelors Thesis), University of Tübingen, Germany (2003).
Citations
View my Google Scholar profile.