Integrative Visualization for Tumor Subtype Characterization
Project Page | A tool for integrative visualization of cancer genomics data from The Cancer Genome Atlas project to identify and characterize tumor subtypes.
Space Maps
Project Page | A glyph-based visualization method for very large gene expression data sets that cover hundreds or thousands of samples.
AEX – ArrayExpress Explorer
Project Page | An ontology-guided visual exploration tool for the ArrayExpress Archive built around a tree map visualization of a biomedical ontology.
Past Projects
REX – Retrieval of Experiments
Project Page | Probabilistic retrieval and visualization of biologically relevant microarray experiments from large collections of gene expression studies.
Prequips
Website | Prequips is a modular software platform for integration, visualization and analysis of complex LC/MS-MS proteomics data sets. The software provides access to data produced by proteomics analysis pipelines and bridges the gap to high-level analysis tools used in systems biology.
Prion Disease Database
Project Page | Website | The Prion Disease Database (PDDB) is a public database that supports the prion disease research community by collecting, integrating, and presenting data from public sources and collaborating laboratories.
Mayday
Website | Mayday is a workbench for interactive visualization, analysis and storage of microarray data. It supports the development and integration of existing and novel analysis methods through a plugin interface.
Enhanced Heatmap
Project Page | A visualization method that allows integration of microarray data and meta information to guide the investigator during data exploration and analysis.
Research
Current Projects
Integrative Visualization for Tumor Subtype Characterization
Project Page | A tool for integrative visualization of cancer genomics data from The Cancer Genome Atlas project to identify and characterize tumor subtypes.
Space Maps
Project Page | A glyph-based visualization method for very large gene expression data sets that cover hundreds or thousands of samples.
AEX – ArrayExpress Explorer
Project Page | An ontology-guided visual exploration tool for the ArrayExpress Archive built around a tree map visualization of a biomedical ontology.
Past Projects
REX – Retrieval of Experiments
Project Page | Probabilistic retrieval and visualization of biologically relevant microarray experiments from large collections of gene expression studies.
Prequips
Website | Prequips is a modular software platform for integration, visualization and analysis of complex LC/MS-MS proteomics data sets. The software provides access to data produced by proteomics analysis pipelines and bridges the gap to high-level analysis tools used in systems biology.
Prion Disease Database
Project Page | Website | The Prion Disease Database (PDDB) is a public database that supports the prion disease research community by collecting, integrating, and presenting data from public sources and collaborating laboratories.
Mayday
Website | Mayday is a workbench for interactive visualization, analysis and storage of microarray data. It supports the development and integration of existing and novel analysis methods through a plugin interface.
Enhanced Heatmap
Project Page | A visualization method that allows integration of microarray data and meta information to guide the investigator during data exploration and analysis.